Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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- Orthologues
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Genetic Variation
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Gene: Smtn ENSRNOG00000019451

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Description

smoothelin [Source:RGD Symbol;Acc:1310216]

Gene Synonyms

LOC103690128, LOC289734

Location

Primary_assembly 14: 82,621,375-82,644,514 reverse strand.

GRCr8:CM070404.1

About this gene

This gene has 5 transcripts (splice variants) and 124 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000105093.2	Smtn-204	3990	923aa	ENSRNOP00000094180.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AH70 A6IKC2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000095950.2	Smtn-202	3933	904aa	ENSRNOP00000097471.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ASQ7	-
ENSRNOT00000026481.5	Smtn-201	3307	921aa	ENSRNOP00000026481.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6IKC3 D4ABA5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000118432.2	Smtn-205	3076	844aa	ENSRNOP00000079915.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZNI1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000098716.2	Smtn-203	1988	523aa	ENSRNOP00000084768.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A098	-

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Summary

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