Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Synj2 ENSRNOG00000017114

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Description

synaptojanin 2 [Source:RGD Symbol;Acc:69436]

Location

Primary_assembly 1: 48,923,737-49,038,650 forward strand.

GRCr8:CM070391.1

About this gene

This gene has 5 transcripts (splice variants), 143 orthologues, 13 paralogues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000149366.1	Synj2-205	5044	1496aa	ENSRNOP00000104494.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6KNZ4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000129353.1	Synj2-204	5056	1479aa	ENSRNOP00000112432.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6KNZ6	-
ENSRNOT00000068476.6	Synj2-203	5030	1248aa	ENSRNOP00000063385.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6KNZ7 F1M2D6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000066798.6	Synj2-201	4423	1301aa	ENSRNOP00000059744.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1M0S5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000067661.5	Synj2-202	3845	1118aa	ENSRNOP00000062564.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LPP1	-

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Summary

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