Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
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  - Gene tree
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Ontologies
Phenotypes
Genetic Variation
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- Structural variants
Gene expression
Pathway
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External references
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ID History
- Gene history

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Gene: Cxcl12 ENSRNOG00000013589

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Description

C-X-C motif chemokine ligand 12 [Source:RGD Symbol;Acc:3651]

Gene Synonyms

Sdf1

Location

Primary_assembly 4: 150,388,325-150,401,168 forward strand.

mRatBN7.2:CM026977.1

About this gene

This gene has 2 transcripts (splice variants), 266 orthologues and is associated with 43 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000066670.4	Cxcl12-201	5354	119aa	ENSRNOP00000059574.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q80YV8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000098665.1	Cxcl12-202	2183	81aa	ENSRNOP00000085514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GDX4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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