Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Il16 ENSRNOG00000011680

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Description

interleukin 16 [Source:RGD Symbol;Acc:1583872]

Gene Synonyms

Il16_mapped

Location

Primary_assembly 1: 147,027,097-147,127,023 reverse strand.

GRCr8:CM070391.1

About this gene

This gene has 6 transcripts (splice variants), 234 orthologues, 1 paralogue and is associated with 21 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000101850.2	Il16-203	5296	1425aa	ENSRNOP00000091335.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AF93	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000153733.1	Il16-204	5202	1358aa	ENSRNOP00000109090.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000154763.1	Il16-205	5194	1391aa	ENSRNOP00000105642.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000101175.2	Il16-202	5131	1370aa	ENSRNOP00000083582.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZZI8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000016289.6	Il16-201	5110	1403aa	ENSRNOP00000016289.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A4I9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000165706.1	Il16-206	4576	1240aa	ENSRNOP00000104773.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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