Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: Snph ENSRNOG00000009588

.

Description

syntaphilin [Source:RGD Symbol;Acc:1305867]

Location

Primary_assembly 3: 160,560,097-160,599,728 reverse strand.

GRCr8:CM070393.1

About this gene

This gene has 3 transcripts (splice variants), 231 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000012727.7	Snph-201	3176	581aa	ENSRNOP00000012727.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2Q5Z5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000100129.2	Snph-203	3070	504aa	ENSRNOP00000097133.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AS45 B5DF41	-
ENSRNOT00000099550.2	Snph-202	2895	468aa	ENSRNOP00000082917.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZUF6 A6KHJ3	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

.

Summary

.

.