Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
- Paralogues
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Ontologies
- GO: Anatomical entity
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Genetic Variation
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Supporting evidence
ID History
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Gene: Begain ENSRNOG00000004650

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Description

brain-enriched guanylate kinase-associated [Source:RGD Symbol;Acc:708347]

Location

Primary_assembly 6: 133,708,007-133,744,526 reverse strand.

GRCr8:CM070396.1

About this gene

This gene has 9 transcripts (splice variants), 116 orthologues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000095766.2	Begain-203	3339	804aa	ENSRNOP00000088091.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AA22	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000161251.1	Begain-208	3233	755aa	ENSRNOP00000099634.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000158669.1	Begain-207	3209	748aa	ENSRNOP00000099151.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000140322.1	Begain-205	3117	619aa	ENSRNOP00000102527.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000152282.1	Begain-206	3090	693aa	ENSRNOP00000100911.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000168582.1	Begain-209	3038	690aa	ENSRNOP00000104689.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000082216.3	Begain-202	2953	609aa	ENSRNOP00000071412.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O88881-1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000041903.7	Begain-201	2932	629aa	ENSRNOP00000049699.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O88881-2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000117298.2	Begain-204	2742	605aa	ENSRNOP00000086294.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GDW4	-

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Summary

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