Summary
- Splice variants
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- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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ID History
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Gene: Ppfia2 ENSRNOG00000004353

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Description

PTPRF interacting protein alpha 2 [Source:RGD Symbol;Acc:1305021]

Gene Synonyms

LOC362876

Location

Primary_assembly 7: 43,653,053-44,126,557 forward strand.

GRCr8:CM070397.1

About this gene

This gene has 6 transcripts (splice variants), 216 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000108079.2	Ppfia2-202	5335	1261aa	ENSRNOP00000094445.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AM56	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000142386.1	Ppfia2-205	5364	1186aa	ENSRNOP00000104793.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000174016.1	Ppfia2-206	5355	1183aa	ENSRNOP00000110837.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000139907.1	Ppfia2-204	5325	1173aa	ENSRNOP00000109305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000119432.2	Ppfia2-203	4953	1230aa	ENSRNOP00000093332.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AK94	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000005862.8	Ppfia2-201	3382	1126aa	ENSRNOP00000005862.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1M8A4	-

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Summary

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