Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Gene: Efcab2 ENSRNOG00000042201

Description

EF-hand calcium binding domain 2 [Source:RGD Symbol;Acc:1308593]

Gene Synonyms

LOC102550369, LOC289280, RGD1308593

Location

Primary_assembly 13: 90,152,185-90,238,218 forward strand.

mRatBN7.2:CM026986.1

About this gene

This gene has 3 transcripts (splice variants), 160 orthologues, 23 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000109721.1	Efcab2-203	3755	211aa	ENSRNOP00000084748.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZXW0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000084718.2	Efcab2-202	3027	179aa	ENSRNOP00000074977.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K9F5	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000029723.5	Efcab2-201	2604	138aa	ENSRNOP00000037547.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZXJ2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Gene: Efcab2 ENSRNOG00000042201

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Gene: Efcab2 ENSRNOG00000042201

Summary

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