Summary
- Splice variants
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Comparative Genomics
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Gene: Spag5 ENSRNOG00000011777

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Description

sperm associated antigen 5 [Source:RGD Symbol;Acc:620152]

Location

Primary_assembly 10: 63,198,768-63,216,745 forward strand.

mRatBN7.2:CM026983.1

About this gene

This gene has 3 transcripts (splice variants), 126 orthologues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000106446.1	Spag5-203	3886	1195aa	ENSRNOP00000082789.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZXS9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSRNOT00000015651.8	Spag5-201	3862	1187aa	ENSRNOP00000015651.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GUU2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000106403.1	Spag5-202	3769	1156aa	ENSRNOP00000085975.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A4Y3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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