Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Rfx2 ENSRNOG00000045846

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Description

regulatory factor X2 [Source:RGD Symbol;Acc:1588579]

Gene Synonyms

LOC301121

Location

Primary_assembly 9: 1,690,612-1,758,529 reverse strand.

GRCr8:CM070399.1

About this gene

This gene has 4 transcripts (splice variants), 204 orthologues, 7 paralogues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000132946.1	Rfx2-203	3626	784aa	ENSRNOP00000101319.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000084312.3	Rfx2-202	3335	717aa	ENSRNOP00000074363.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K7V5	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000073025.4	Rfx2-201	3260	692aa	ENSRNOP00000064610.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GV50	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000152077.1	Rfx2-204	2150	668aa	ENSRNOP00000104918.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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