Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Sema3a ENSRNOG00000023337

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Description

semaphorin 3A [Source:RGD Symbol;Acc:3657]

Location

Primary_assembly 4: 22,245,322-22,535,774 reverse strand.

GRCr8:CM070394.1

About this gene

This gene has 4 transcripts (splice variants), 204 orthologues, 19 paralogues and is associated with 11 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000034692.5	Sema3a-201	3254	772aa	ENSRNOP00000036472.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QL58 A6K213	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000115447.3	Sema3a-203	3248	770aa	ENSRNOP00000090740.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AE44	-
ENSRNOT00000096965.3	Sema3a-202	3134	732aa	ENSRNOP00000085581.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q63548	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000152075.1	Sema3a-204	3075	737aa	ENSRNOP00000107058.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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