Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Rpain ENSRNOG00000006913

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Description

RPA interacting protein [Source:RGD Symbol;Acc:1308492]

Gene Synonyms

LOC287463, RGD1308492

Location

Primary_assembly 10: 56,190,967-56,199,685 forward strand.

GRCr8:CM070400.1

About this gene

This gene has 6 transcripts (splice variants), 188 orthologues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000009082.8	Rpain-201	2143	266aa	ENSRNOP00000009082.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4G2Y1-1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000101989.2	Rpain-205	1086	219aa	ENSRNOP00000097917.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ASS9 A6HGA9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000044363.5	Rpain-202	1080	216aa	ENSRNOP00000040269.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4G2Y1-2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000104431.2	Rpain-206	860	172aa	ENSRNOP00000086733.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A6K3	-
ENSRNOT00000100569.2	Rpain-204	662	106aa	ENSRNOP00000080727.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G4Y4	-
ENSRNOT00000100257.2	Rpain-203	623	93aa	ENSRNOP00000084075.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZX12	-

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Summary

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