Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Mtdh ENSRNOG00000006870

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Description

metadherin [Source:RGD Symbol;Acc:620992]

Location

Primary_assembly 7: 67,192,393-67,249,584 forward strand.

GRCr8:CM070397.1

About this gene

This gene has 4 transcripts (splice variants), 203 orthologues, 1 paralogue and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000009989.5	Mtdh-201	4044	738aa	ENSRNOP00000009989.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2UIC6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000096827.2	Mtdh-202	3954	708aa	ENSRNOP00000077252.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y7K9 A6HQZ2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000108860.2	Mtdh-204	3888	686aa	ENSRNOP00000078672.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZLQ8	-
ENSRNOT00000105848.2	Mtdh-203	3855	675aa	ENSRNOP00000088806.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AJK9	-

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Summary

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