Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Homer2 ENSRNOG00000061450

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Description

homer scaffold protein 2 [Source:RGD Symbol;Acc:620705]

Gene Synonyms

Vesl-2

Location

Primary_assembly 1: 144,976,436-145,068,997 reverse strand.

GRCr8:CM070391.1

About this gene

This gene has 3 transcripts (splice variants), 210 orthologues, 2 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000094383.2	Homer2-202	2007	355aa	ENSRNOP00000088957.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GHM8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000087785.3	Homer2-201	2269	354aa	ENSRNOP00000070858.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O88801-1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000156492.1	Homer2-203	2140	350aa	ENSRNOP00000103274.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Gene tree

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