Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Cdx1 ENSRNOG00000060334

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Description

caudal type homeo box 1 [Source:RGD Symbol;Acc:621233]

Gene Synonyms

LOC364883

Location

Primary_assembly 18: 56,742,984-56,761,299 reverse strand.

GRCr8:CM070408.1

About this gene

This gene has 1 transcript (splice variant), 95 orthologues, 2 paralogues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000083379.3	Cdx1-201	1764	273aa	ENSRNOP00000071345.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K086	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Gene tree

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