Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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- Structural variants
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ID History
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Gene: Slc48a1 ENSRNOG00000053196

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Description

solute carrier family 48 member 1 [Source:RGD Symbol;Acc:1562880]

Gene Synonyms

HRG-1, Hrg1, LOC300191, MGC125237

Location

Primary_assembly 7: 130,794,245-130,803,022 forward strand.

GRCr8:CM070397.1

About this gene

This gene has 2 transcripts (splice variants) and 260 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000105518.2	Slc48a1-202	2516	146aa	ENSRNOP00000077408.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0BNL4-2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000079388.3	Slc48a1-201	1715	89aa	ENSRNOP00000071123.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2R3J2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Gene tree

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