Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Cnn1 ENSRNOG00000027736

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Description

calponin 1 [Source:RGD Symbol;Acc:621883]

Location

Primary_assembly 8: 28,908,330-28,919,482 forward strand.

GRCr8:CM070398.1

About this gene

This gene has 3 transcripts (splice variants), 219 orthologues, 5 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000106276.2	Cnn1-203	3930	293aa	ENSRNOP00000080119.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q08290	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000029577.8	Cnn1-201	1979	290aa	ENSRNOP00000029782.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QH34	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000096004.2	Cnn1-202	819	237aa	ENSRNOP00000085657.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GD56	-

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Gene tree

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