Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Col11a1 ENSRNOG00000023148

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Description

collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]

Location

Primary_assembly 2: 204,509,136-204,702,264 forward strand.

GRCr8:CM070392.1

About this gene

This gene has 5 transcripts (splice variants), 219 orthologues, 36 paralogues and is associated with 26 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000164805.1	Col11a1-205	7826	1855aa	ENSRNOP00000104130.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000144283.1	Col11a1-202	7709	1816aa	ENSRNOP00000109210.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000068413.5	Col11a1-201	7673	1804aa	ENSRNOP00000061595.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P20909-1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000152644.1	Col11a1-203	7556	1765aa	ENSRNOP00000110050.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000160024.1	Col11a1-204	7427	1722aa	ENSRNOP00000103446.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Gene tree

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