Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Ldb1 ENSRNOG00000018468

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Description

LIM domain binding 1 [Source:RGD Symbol;Acc:1310359]

Gene Synonyms

LOC309447

Location

Primary_assembly 1: 254,826,160-254,838,998 reverse strand.

GRCr8:CM070391.1

About this gene

This gene has 2 transcripts (splice variants), 273 orthologues, 1 paralogue and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000079483.3	Ldb1-202	1908	411aa	ENSRNOP00000069575.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JVQ2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000040904.7	Ldb1-201	2271	375aa	ENSRNOP00000042807.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JHK6 D3ZT89	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Gene tree

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