Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Col27a1 ENSRNOG00000007657

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Description

collagen type XXVII alpha 1 chain [Source:RGD Symbol;Acc:735115]

Location

Primary_assembly 5: 81,661,685-81,781,502 forward strand.

GRCr8:CM070395.1

About this gene

This gene has 3 transcripts (splice variants), 105 orthologues, 36 paralogues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000010333.5	Col27a1-201	7630	1846aa	ENSRNOP00000010333.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2Q4D5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000155205.1	Col27a1-202	7603	1837aa	ENSRNOP00000108817.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000162794.1	Col27a1-203	7375	1846aa	ENSRNOP00000104506.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Gene tree

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