Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

Configure this page

Export data

Share this page

Bookmark this page

.

Gene: Ubn1 ENSRNOG00000003019

.

Description

ubinuclein 1 [Source:RGD Symbol;Acc:1311582]

Gene Synonyms

LOC302935

Location

Primary_assembly 10: 11,003,036-11,038,466 reverse strand.

GRCr8:CM070400.1

About this gene

This gene has 4 transcripts (splice variants), 196 orthologues, 1 paralogue and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000061236.5	Ubn1-201	6379	1135aa	ENSRNOP00000057947.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A8C6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000151595.1	Ubn1-204	5181	1126aa	ENSRNOP00000100685.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000118527.2	Ubn1-202	5118	1105aa	ENSRNOP00000096576.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AM22	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000142345.1	Ubn1-203	4896	1031aa	ENSRNOP00000109789.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

.

Gene tree

.

.