Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Prdm5 ENSRNOG00000023679

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Description

PR/SET domain 5 [Source:RGD Symbol;Acc:1588700]

Gene Synonyms

LOC689788

Location

Primary_assembly 4: 96,405,493-96,567,647 forward strand.

GRCr8:CM070394.1

About this gene

This gene has 6 transcripts (splice variants), 203 orthologues, 6 paralogues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000130646.1	Prdm5-205	2278	629aa	ENSRNOP00000104580.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000113591.2	Prdm5-204	2188	599aa	ENSRNOP00000080705.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZQN7 A6KF30	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000152195.1	Prdm5-206	2071	577aa	ENSRNOP00000101667.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000009569.10	Prdm5-201	1688	501aa	ENSRNOP00000009569.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZRZ9	-
ENSRNOT00000095255.2	Prdm5-202	1636	415aa	ENSRNOP00000095499.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AMS1	-
ENSRNOT00000102224.2	Prdm5-203	915	221aa	ENSRNOP00000086425.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A661	-

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Paralogues

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