Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Pcnx3 ENSRNOG00000020742

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Description

pecanex 3 [Source:RGD Symbol;Acc:1305529]

Gene Synonyms

LOC309167, Pcnxl3

Location

Primary_assembly 1: 212,379,851-212,403,166 reverse strand.

GRCr8:CM070391.1

About this gene

This gene has 4 transcripts (splice variants), 186 orthologues, 3 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000064136.5	Pcnx3-201	6734	2041aa	ENSRNOP00000059738.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZSQ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000097729.2	Pcnx3-202	6698	2029aa	ENSRNOP00000095745.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AU25	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000168853.1	Pcnx3-204	6632	2007aa	ENSRNOP00000109557.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000136741.1	Pcnx3-203	6335	2026aa	ENSRNOP00000106094.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Paralogues

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