Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Phactr2 ENSRNOG00000015473

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Description

phosphatase and actin regulator 2 [Source:RGD Symbol;Acc:1303141]

Location

Primary_assembly 1: 9,418,085-9,680,583 reverse strand.

GRCr8:CM070391.1

About this gene

This gene has 10 transcripts (splice variants), 221 orthologues, 3 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000103115.2	Phactr2-205	2394	711aa	ENSRNOP00000081639.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZSY0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000098982.2	Phactr2-204	2360	637aa	ENSRNOP00000091111.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AF00	-
ENSRNOT00000118029.2	Phactr2-209	2258	648aa	ENSRNOP00000081040.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G7F9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000114682.2	Phactr2-207	2157	632aa	ENSRNOP00000087602.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A650	-
ENSRNOT00000117080.2	Phactr2-208	2145	628aa	ENSRNOP00000090478.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AEE3	-
ENSRNOT00000106732.2	Phactr2-206	2064	601aa	ENSRNOP00000092238.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AHS5	-
ENSRNOT00000118762.2	Phactr2-210	1998	579aa	ENSRNOP00000079720.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZNC9	-
ENSRNOT00000095947.2	Phactr2-203	1986	575aa	ENSRNOP00000079024.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZMK8	-
ENSRNOT00000048754.7	Phactr2-201	1968	569aa	ENSRNOP00000045608.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V9F4	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000088558.3	Phactr2-202	1864	554aa	ENSRNOP00000074696.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2K8Q4	-

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Paralogues

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