Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Sparcl1 ENSRNOG00000015093

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Description

SPARC like 1 [Source:RGD Symbol;Acc:2531]

Gene Synonyms

Ecm2, Sc1

Location

Primary_assembly 14: 5,914,535-5,969,120 forward strand.

GRCr8:CM070404.1

About this gene

This gene has 4 transcripts (splice variants), 189 orthologues, 1 paralogue and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000125905.1	Sparcl1-202	2559	648aa	ENSRNOP00000100782.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000160393.1	Sparcl1-204	3146	633aa	ENSRNOP00000099816.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000020357.8	Sparcl1-201	2744	636aa	ENSRNOP00000020357.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V7X5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000142668.1	Sparcl1-203	2524	634aa	ENSRNOP00000101585.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6K5T4	-

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Paralogues

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