Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Nup50 ENSRNOG00000013423

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Description

nucleoporin 50 [Source:RGD Symbol;Acc:3191]

Gene Synonyms

Npap60, Rtp60

Location

Primary_assembly 7: 117,925,716-117,946,959 forward strand.

GRCr8:CM070397.1

About this gene

This gene has 3 transcripts (splice variants), 218 orthologues, 1 paralogue and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000018155.8	Nup50-201	4773	498aa	ENSRNOP00000018155.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V7R1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000080933.3	Nup50-202	4484	468aa	ENSRNOP00000075457.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2KAM9	-
ENSRNOT00000140228.1	Nup50-203	2095	437aa	ENSRNOP00000110427.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Paralogues

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