Gene: Col9a1 ENSRNOG00000012920

Description

collagen type IX alpha 1 chain [Source:RGD Symbol;Acc:1309425]

Gene Synonyms

LOC305104

Location

GRCr8:CM070399.1

About this gene

This gene has 3 transcripts (splice variants), 237 orthologues, 36 paralogues and is associated with 14 phenotypes.

Transcripts

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000018116.8	Col9a1-201	3804	934aa	ENSRNOP00000018116.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LQ93	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000150022.1	Col9a1-203	3832	927aa	ENSRNOP00000103106.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000115769.2	Col9a1-202	3016	680aa	ENSRNOP00000081771.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZSW9	-

Paralogues