Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Aptx ENSRNOG00000006582

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Description

aprataxin [Source:RGD Symbol;Acc:628740]

Location

Primary_assembly 5: 60,597,648-60,618,790 reverse strand.

GRCr8:CM070395.1

About this gene

This gene has 3 transcripts (splice variants), 203 orthologues, 1 paralogue and is associated with 11 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000046463.6	Aptx-201	1413	329aa	ENSRNOP00000046400.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6IIS0 Q8K4H4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000090891.3	Aptx-202	1183	300aa	ENSRNOP00000072443.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2R5W7	-
ENSRNOT00000094147.2	Aptx-203	1146	240aa	ENSRNOP00000094856.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AKE7	-

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Paralogues

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