Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Prpf40a ENSRNOG00000004864

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Description

pre-mRNA processing factor 40 homolog A [Source:RGD Symbol;Acc:1311401]

Gene Synonyms

Fnbp3, LOC295607

Location

Primary_assembly 3: 58,038,042-58,099,363 reverse strand.

GRCr8:CM070393.1

About this gene

This gene has 4 transcripts (splice variants), 210 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000095713.2	Prpf40a-202	4251	1016aa	ENSRNOP00000083490.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZVY5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000128758.1	Prpf40a-204	4334	968aa	ENSRNOP00000107993.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000104801.2	Prpf40a-203	3921	870aa	ENSRNOP00000083163.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZVI3	-
ENSRNOT00000006549.7	Prpf40a-201	3806	929aa	ENSRNOP00000006549.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZJ92	-

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Paralogues

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