Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Col18a1 ENSRNOG00000001229

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Description

collagen type XVIII alpha 1 chain [Source:RGD Symbol;Acc:70936]

Location

Primary_assembly 20: 11,473,645-11,582,112 forward strand.

GRCr8:CM070410.1

About this gene

This gene has 3 transcripts (splice variants), 177 orthologues, 36 paralogues and is associated with 29 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000116507.2	Col18a1-203	6633	1785aa	ENSRNOP00000096747.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GLR1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000095032.2	Col18a1-202	5028	1320aa	ENSRNOP00000082737.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZV54	-
ENSRNOT00000045315.6	Col18a1-201	5007	1311aa	ENSRNOP00000047962.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JK98 F1LR02	-

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Paralogues

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