Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: Itga1 ENSRNOG00000053550

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Description

integrin subunit alpha 1 [Source:RGD Symbol;Acc:2923]

Gene Synonyms

VLA-1

Location

Primary_assembly 2: 48,386,249-48,545,284 reverse strand.

GRCr8:CM070392.1

About this gene

This gene has 3 transcripts (splice variants), 232 orthologues, 17 paralogues and is associated with 6 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000106157.2	Itga1-202	3949	1180aa	ENSRNOP00000086956.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6I5T3 P18614	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000086114.3	Itga1-201	3909	1170aa	ENSRNOP00000074337.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2R8Q8	-
ENSRNOT00000150403.1	Itga1-203	3739	1110aa	ENSRNOP00000101823.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Orthologues

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