Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Casq2 ENSRNOG00000016243

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Description

calsequestrin 2 [Source:RGD Symbol;Acc:2276]

Gene Synonyms

cardCSQ

Location

Primary_assembly 2: 192,214,537-192,270,820 forward strand.

GRCr8:CM070392.1

About this gene

This gene has 3 transcripts (splice variants), 274 orthologues, 1 paralogue and is associated with 20 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000021846.8	Casq2-201	2541	449aa	ENSRNOP00000021846.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A994 F1M944	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000111697.2	Casq2-203	2484	430aa	ENSRNOP00000086716.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A1S3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000101544.2	Casq2-202	2457	407aa	ENSRNOP00000097042.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AS63	-

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Orthologues

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