Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Col5a1 ENSRNOG00000008749

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Description

collagen type V alpha 1 chain [Source:RGD Symbol;Acc:70920]

Location

Primary_assembly 3: 31,606,486-31,753,020 forward strand.

GRCr8:CM070393.1

About this gene

This gene has 6 transcripts (splice variants), 217 orthologues, 36 paralogues and is associated with 41 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000134795.1	Col5a1-205	6333	1840aa	ENSRNOP00000106819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000086352.3	Col5a1-202	6765	1788aa	ENSRNOP00000070132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JX47	-
ENSRNOT00000012334.9	Col5a1-201	5551	1777aa	ENSRNOP00000012334.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	G3V763	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000110258.2	Col5a1-203	5504	1812aa	ENSRNOP00000084311.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GA68	-
ENSRNOT00000133981.1	Col5a1-204	5447	1807aa	ENSRNOP00000104614.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000145497.1	Col5a1-206	5441	1805aa	ENSRNOP00000109478.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Orthologues

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