Gene: Usp4 ENSRNOG00000054863

Description

ubiquitin specific peptidase 4 [Source:RGD Symbol;Acc:1587387]

Gene Synonyms

LOC290864

Location

Primary_assembly 8: 117,914,614-117,957,949 forward strand.

GRCr8:CM070398.1

About this gene

This gene has 3 transcripts (splice variants), 143 orthologues, 50 paralogues and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000083046.3	Usp4-201	3360	961aa	ENSRNOP00000071463.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B2GUZ1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000112882.2	Usp4-203	2953	933aa	ENSRNOP00000082514.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZVE8	-
ENSRNOT00000085609.3	Usp4-202	2932	914aa	ENSRNOP00000069514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6I350 M0R851	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,