Gene: Rprd2 ENSRNOG00000054294

Description

regulation of nuclear pre-mRNA domain containing 2 [Source:RGD Symbol;Acc:2320792]

Gene Synonyms

LOC100364568

Location

Primary_assembly 2: 186,000,316-186,056,943 reverse strand.

GRCr8:CM070392.1

About this gene

This gene has 5 transcripts (splice variants), 272 orthologues, 2 paralogues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000085404.3	Rprd2-201	5146	1481aa	ENSRNOP00000068661.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JTD1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000100824.2	Rprd2-202	8652	1451aa	ENSRNOP00000092500.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AHR3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000121979.1	Rprd2-204	8580	1427aa	ENSRNOP00000107430.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000141383.1	Rprd2-205	8574	1425aa	ENSRNOP00000111227.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000106513.2	Rprd2-203	7915	1340aa	ENSRNOP00000081089.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZS80	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,