Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: P4ha1 ENSRNOG00000050655

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Description

prolyl 4-hydroxylase subunit alpha 1 [Source:RGD Symbol;Acc:621000]

Location

Primary_assembly 20: 27,845,141-27,895,404 forward strand.

GRCr8:CM070410.1

About this gene

This gene has 4 transcripts (splice variants), 209 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000117090.2	P4ha1-203	2625	534aa	ENSRNOP00000096608.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ASU1 A6K3U5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000119688.2	P4ha1-204	2690	481aa	ENSRNOP00000077480.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZKB2	-
ENSRNOT00000070897.3	P4ha1-201	2102	525aa	ENSRNOP00000064405.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AP51 A0A8L2QWJ8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000104909.2	P4ha1-202	1889	454aa	ENSRNOP00000088456.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A688	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data