Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LOC103692127 ENSRNOG00000047951

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Description

homeobox protein Hox-A5 [Source:RGD Symbol;Acc:9419544]

Location

Primary_assembly 4: 82,632,306-82,639,038 reverse strand.

GRCr8:CM070394.1

About this gene

This gene has 3 transcripts (splice variants), 192 orthologues, 40 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000171159.1	LOC103692127-203	5169	382aa	ENSRNOP00000112212.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000145794.1	LOC103692127-202	5054	382aa	ENSRNOP00000099280.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000074167.4	LOC103692127-201	2926	381aa	ENSRNOP00000064639.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0R5H2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data