Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Tub ENSRNOG00000046566

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Description

TUB bipartite transcription factor [Source:RGD Symbol;Acc:3918]

Location

Primary_assembly 1: 172,382,197-172,465,790 forward strand.

GRCr8:CM070391.1

About this gene

This gene has 7 transcripts (splice variants), 206 orthologues, 5 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000139306.1	Tub-205	6209	633aa	ENSRNOP00000111371.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000154031.1	Tub-207	6154	584aa	ENSRNOP00000102379.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000107491.3	Tub-202	6046	548aa	ENSRNOP00000097726.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GM69	-
ENSRNOT00000145222.1	Tub-206	5995	531aa	ENSRNOP00000109367.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZXW6	-
ENSRNOT00000130742.1	Tub-204	5995	531aa	ENSRNOP00000101142.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000122264.1	Tub-203	5862	548aa	ENSRNOP00000104333.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000074636.5	Tub-201	1574	505aa	ENSRNOP00000064486.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	O88808	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data