Gene: Chl1 ENSRNOG00000045771

Description

cell adhesion molecule L1-like [Source:RGD Symbol;Acc:620122]

Gene Synonyms

Call, LOC108350698

Location

Primary_assembly 4: 137,847,895-138,062,077 forward strand.

GRCr8:CM070394.1

About this gene

This gene has 3 transcripts (splice variants), 135 orthologues, 35 paralogues and is associated with 7 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000073039.5	Chl1-201	7861	1224aa	ENSRNOP00000067122.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M0RC17	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000116427.2	Chl1-203	7813	1209aa	ENSRNOP00000076353.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y8T8	-
ENSRNOT00000107051.2	Chl1-202	3921	1170aa	ENSRNOP00000089187.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A9A6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,