Summary
- Splice variants
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Comparative Genomics
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Gene: Smim7 ENSRNOG00000042037

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Description

small integral membrane protein 7 [Source:RGD Symbol;Acc:1588793]

Gene Synonyms

LOC688495

Location

Primary_assembly 16: 17,308,395-17,312,371 forward strand.

GRCr8:CM070406.1

About this gene

This gene has 2 transcripts (splice variants) and 170 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000066121.3	Smim7-201	1347	75aa	ENSRNOP00000061134.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QTH6 A6K9N6 B0BN70	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000107284.2	Smim7-202	1437	71aa	ENSRNOP00000084978.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6GBB1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data