Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Strains
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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- Structural variants
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Pathway
Molecular interactions
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External references
Supporting evidence
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Gene: Cldn12 ENSRNOG00000039862

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Description

claudin 12 [Source:RGD Symbol;Acc:1561053]

Gene Synonyms

LOC500000, RGD1561053

Location

Primary_assembly 4: 29,477,342-29,493,776 forward strand.

GRCr8:CM070394.1

About this gene

This gene has 5 transcripts (splice variants), 189 orthologues and is associated with 1 phenotype.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000140943.1	Cldn12-205	9061	244aa	ENSRNOP00000103179.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6K262	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000098574.2	Cldn12-203	6252	244aa	ENSRNOP00000084854.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6K262 D4A8Y0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000111546.2	Cldn12-204	5153	244aa	ENSRNOP00000097194.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6K262 D4A8Y0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000061199.4	Cldn12-201	4286	244aa	ENSRNOP00000057913.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6K262 D4A8Y0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000095428.2	Cldn12-202	4039	244aa	ENSRNOP00000096834.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6K262 D4A8Y0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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