Summary
- Splice variants
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- Gene alleles
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Genetic Variation
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Gene: Sohlh2 ENSRNOG00000038091

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Description

spermatogenesis and oogenesis specific basic helix-loop-helix 2 [Source:RGD Symbol;Acc:1589577]

Gene Synonyms

LOC295054, LOC619575, RGD1304752

Location

Primary_assembly 2: 141,512,293-141,534,863 forward strand.

GRCr8:CM070392.1

About this gene

This gene has 3 transcripts (splice variants), 86 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000166599.1	Sohlh2-203	2533	488aa	ENSRNOP00000107781.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000044424.5	Sohlh2-201	2340	462aa	ENSRNOP00000049772.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6JVE9 Q3MHT3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000110838.2	Sohlh2-202	2327	469aa	ENSRNOP00000084522.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A1I4	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data