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Gene: Nploc4 ENSRNOG00000036698

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Description

NPL4 homolog, ubiquitin recognition factor [Source:RGD Symbol;Acc:620794]

Gene Synonyms

MGC124575, Npl4

Location

Primary_assembly 10: 106,153,173-106,208,264 reverse strand.

GRCr8:CM070400.1

About this gene

This gene has 4 transcripts (splice variants) and 210 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000080188.3	Nploc4-202	3703	651aa	ENSRNOP00000068982.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JU66 Q9ES54	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000168258.1	Nploc4-204	3631	584aa	ENSRNOP00000100116.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000114737.2	Nploc4-203	3607	576aa	ENSRNOP00000082441.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZTJ3	-
ENSRNOT00000054973.5	Nploc4-201	3547	607aa	ENSRNOP00000051856.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LQX9	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data