Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
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- Gene history

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Gene: Lyc2 ENSRNOG00000034139

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Description

lysozyme C type 2 [Source:RGD Symbol;Acc:1593616]

Gene Synonyms

LOC102549714, LOC688047, Lyz2, MGC188464

Location

Primary_assembly 7: 54,772,934-54,780,676 forward strand.

GRCr8:CM070397.1

About this gene

This gene has 2 transcripts (splice variants), 258 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000086821.3	Lyc2-202	2010	156aa	ENSRNOP00000076711.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y928	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000064594.5	Lyc2-201	1743	155aa	ENSRNOP00000059657.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9K3Y798 B2RYD4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data