Gene: Cdh23 ENSRNOG00000033087

Description

cadherin-related 23 [Source:RGD Symbol;Acc:619760]

Gene Synonyms

LOC103694885, W

Location

Primary_assembly 20: 28,783,564-29,165,332 reverse strand.

GRCr8:CM070410.1

About this gene

This gene has 3 transcripts (splice variants), 222 orthologues, 33 paralogues and is associated with 34 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000048029.6	Cdh23-201	10406	3352aa	ENSRNOP00000048338.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1LPE5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000118579.2	Cdh23-203	10932	3321aa	ENSRNOP00000096099.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AP55	-
ENSRNOT00000100038.2	Cdh23-202	10926	3319aa	ENSRNOP00000086738.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A2T2	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,