Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
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ID History
- Gene history

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Gene: Ocel1 ENSRNOG00000032575

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Description

occludin/ELL domain containing 1 [Source:RGD Symbol;Acc:1565407]

Gene Synonyms

LOC290628, MGC189548, RGD1563236, RGD1565407

Location

Primary_assembly 16: 18,077,266-18,079,374 forward strand.

GRCr8:CM070406.1

About this gene

This gene has 3 transcripts (splice variants), 345 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000051802.5	Ocel1-201	1179	225aa	ENSRNOP00000048493.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZE98	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000092073.3	Ocel1-202	1439	208aa	ENSRNOP00000069818.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B5DFM2	-
ENSRNOT00000151196.1	Ocel1-203	627	142aa	ENSRNOP00000106130.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A6K9S5	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data