Gene: Slc44a2 ENSRNOG00000031824

Description

solute carrier family 44 member 2 [Source:RGD Symbol;Acc:1309680]

Gene Synonyms

LOC363024, MGC187957, RGD1309680

Location

Primary_assembly 8: 28,147,030-28,181,495 forward strand.

GRCr8:CM070398.1

About this gene

This gene has 4 transcripts (splice variants), 274 orthologues, 4 paralogues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000109509.2	Slc44a2-202	3592	750aa	ENSRNOP00000083031.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZYC2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000115377.2	Slc44a2-203	3631	709aa	ENSRNOP00000083534.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6G961	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000049973.7	Slc44a2-201	3615	711aa	ENSRNOP00000051322.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QQY0	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSRNOT00000154487.1	Slc44a2-204	3268	649aa	ENSRNOP00000099886.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-