Gene: Vps13c ENSRNOG00000030213

Description

vacuolar protein sorting 13 homolog C [Source:RGD Symbol;Acc:1560364]

Gene Synonyms

LOC363087, RGD1560364

Location

Primary_assembly 8: 77,359,504-77,531,871 forward strand.

GRCr8:CM070398.1

About this gene

This gene has 6 transcripts (splice variants), 215 orthologues, 2 paralogues and is associated with 10 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000107499.2	Vps13c-202	12245	3718aa	ENSRNOP00000079458.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZMR7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000109281.2	Vps13c-203	14923	3622aa	ENSRNOP00000084628.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5ZYI1	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSRNOT00000147486.1	Vps13c-206	14857	3600aa	ENSRNOP00000109300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000111853.2	Vps13c-204	14797	3580aa	ENSRNOP00000097550.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6ARH3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSRNOT00000057522.6	Vps13c-201	12230	3713aa	ENSRNOP00000054331.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D4A4K4	-
ENSRNOT00000133277.1	Vps13c-205	12029	3646aa	ENSRNOP00000112067.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-