Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
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- Orthologues
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Genetic Variation
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Gene: Spock3 ENSRNOG00000029903

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Description

SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3 [Source:RGD Symbol;Acc:1305672]

Gene Synonyms

LOC306404

Location

Primary_assembly 16: 31,149,702-31,582,398 reverse strand.

GRCr8:CM070406.1

About this gene

This gene has 3 transcripts (splice variants), 194 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000115514.2	Spock3-202	3246	448aa	ENSRNOP00000095055.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AMA2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000132234.1	Spock3-203	3057	399aa	ENSRNOP00000106800.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSRNOT00000059750.6	Spock3-201	3005	435aa	ENSRNOP00000056503.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D3ZUT1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data