Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Clic1 ENSRNOG00000029682

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Description

chloride intracellular channel 1 [Source:RGD Symbol;Acc:1303043]

Location

Primary_assembly 20: 3,769,527-3,778,367 reverse strand.

GRCr8:CM070410.1

About this gene

This gene has 3 transcripts (splice variants), 260 orthologues, 14 paralogues and is associated with 8 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000098310.3	Clic1-202	1171	246aa	ENSRNOP00000087153.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6A790	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000120409.2	Clic1-203	1185	241aa	ENSRNOP00000098091.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6MG61	-
ENSRNOT00000068435.6	Clic1-201	935	235aa	ENSRNOP00000060240.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8L2QSI9	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data